Ah, someone from F'burg. I recognize some of the things in your galleries (for instance: under the train station and the whiskey-barrel trash cans). As for what you should have in your portfolio... I've seen it said (I think it might have been Andy) that as photograghers we're judged by the worst photo we display. If the opportunity of the internship is to be judged on your Smugmug site, I'd clean out everything but what you consider to be your very best stuff. If that won't work for you then create a new gallery, put your best stuff in there and direct them to that particular gallery.
Edit: Oh, one more thing - I don't know if they're looking for a particular theme or not but since it is the FLS you probably can't go wrong with showing some of the historical stuff downtown in a good light (pun intended).
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smugmug: www.StandOutphoto.smugmug.com
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Good luck and enjoy!
Her Smugmug page is in her profile: http://www.caitcait.smugmug.com/
Edit: Oh, one more thing - I don't know if they're looking for a particular theme or not but since it is the FLS you probably can't go wrong with showing some of the historical stuff downtown in a good light (pun intended).
http://philu.smugmug.com